From: Identification of intragenic variants in pediatric patients with intellectual disability in Peru
Phenotypes (HP) | Pathogenic or likely pathogenic variants | |||||
---|---|---|---|---|---|---|
PRc | CI (95%) | p | PRa | CI (95%) | p | |
HP:0002714 Downturned corners of mouth | 0.392 | 0.061–2.499 | 0.2497 | 0.014 | 0.002–0.117 | < 0.001 |
HP:0000322 Short filtrum | 1.093 | 0.341–3.499 | 0.8836 | 19.792 | 4.357–89.907 | < 0.001 |
HP:0000486 Strabismus | 0.633 | 0.178–2.252 | 0.4463 | 0.118 | 0.035–0.398 | 0.001 |
HP:0000286 Epicanthus | 0.532 | 0.087–3.245 | 0.4464 | 0.223 | 0.077–0.645 | 0.006 |
HP:0009305 Distal/middle symphalangism of 4th finger | 2.197 | 1.194–4.041 | 0.0433 | 2.890 | 1.162–7.194 | 0.022 |
HP:0000179 Thick lower lip vermilion | 1.090 | 0.215–5.523 | 0.9186 | 1.899 | 1.069–3.373 | 0.029 |
HP:0001332 Dystonia | 2.800 | 1.660–4.720 | 0.0145 | 2.880 | 1.062–7.810 | 0.038 |
HP:0000396 Overfolded helix | 1.667 | 0.603–4.609 | 0.3934 | 4.368 | 0.908–21.021 | 0.066 |
HP:0001276 Hypertonia | 0.392 | 0.061–2.499 | 0.2497 | 0.513 | 0.199–1.318 | 0.166 |
HP:0000750 Delayed speech and language development | 0.519 | 0.142–1.890 | 0.2691 | 0.404 | 0.101–1.617 | 0.200 |
HP:0012758 Psychomotor delay | 1.538 | 0.617–3.835 | 0.3243 | 1.772 | 0.698–4.498 | 0.229 |
HP:0009891 Underdeveloped supraorbital ridges | 1.686 | 0.723–3.932 | 0.2918 | 2.614 | 0.547–12.508 | 0.229 |
HP:0009765 Low hanging columella | 0.811 | 0.145–4.251 | 0.8034 | 0.221 | 0.017–2.886 | 0.249 |
HP:0001290 Generalized hypotonia | 1.601 | 0.831–3.085 | 0.1999 | 1.612 | 0.706–3.679 | 0.257 |
HP:0000729 Autism spectrum disorder | 0.420 | 0.143–1.240 | 0.0744 | 0.479 | 0.131–1.757 | 0.268 |
HP:0000957 CAL spot | 0.811 | 0.145–4.251 | 0.8034 | 0.364 | 0.055–2.392 | 0.293 |
HP:0004322 Short stature | 0.781 | 0.369–1.653 | 0.5041 | 0.706 | 0.303–1.643 | 0.419 |
HP:0040080 Anteverted ears | 0.452 | 0.072–2.827 | 0.3338 | 0.560 | 0.058–5.450 | 0.618 |
HP:0000325 Triangular face | 0.643 | 0.109–3.789 | 0.5982 | 0.759 | 0.206–2.802 | 0.680 |
HP:0001250 Seizures | 1.222 | 0.690–2.164 | 0.4998 | 0.878 | 0.419–1.841 | 0.731 |
HP:0000767 Pectus excavatum | 1.686 | 0.723–3.932 | 0.2918 | 1.177 | 0.459–3.012 | 0.734 |
HP:0000028 Cryptorchidism | 1.667 | 0.603–4.609 | 0.3934 | 1.137 | 0.463–2.791 | 0.779 |
HP:0002376 Developmental regression | 0.806 | 0.235–2.757 | 0.7203 | 0.891 | 0.367–2.162 | 0.799 |
HP:0000252 Microcephaly | 0.822 | 0.435–1.551 | 0.5354 | 0.948 | 0.439–2.044 | 0.891 |
HP:0007429 Few CAL spots | 0.929 | 0.279–3.090 | 0.9025 | 0.993 | 0.317–3.109 | 0.991 |
HP:0001513 Obesity | - | - | - | - | - | - |
HP:0002463 Language disorder | - | - | - | - | - | - |
HP:0100729 Large face | - | - | - | - | - | - |
HP:0000506 Telecanthus | - | - | - | - | - | - |
HP:0012471 Thick lips | - | - | - | - | - | - |