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Table 2 Overview of all detected as well as filtered variants (SNVs & INDELs) of whole genome data of the index patient II-3 (family 1), the brother (II-2) and mother (I-3) as well as the index patient II-1 (family 2). Filter conditions consist of a FAF95 (gnomAD 4.1.0) \(\le\) 2 %, in hearing loss genes (Deafness Variation Database) and the PTPRQ gene

From: Whole-genome sequencing, as a powerful diagnostic tool in hearing loss, reveals novel variants in PTPRQ missed by whole-exome sequencing

Proband

Detected variants (SNVs & INDELs)

Rare (FAF95 \(\le\) 2 %)

In HL genes (DVD)

In PTPRQ gene

Family 1 Index (II-3)

4,883,405

226,010

1,044

25

Family 1 Brother (II-2)

4,828,616

216,310

1,007

21

Family 1 Mother (I-3)

4,867,654

225,579

1,096

23

Family 2 Index (II-1)

4,833,828

208,122

1,020

13