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Table 4 Performance comparison with other models on the Kiba dataset

From: Drug-target binding affinity prediction based on power graph and word2vec

Model

Protein rep

Compound rep

MSE

CI

KronRLS

Smith-Waterman

Pubchem-Sim

0.411

0.782

SimBoost

Smith-Waterman

Pubchem-Sim

0.222

0.836

DeepDTA

1D

1D

0.194

0.863

WideDTA

1D + PDM

1D + LMCS

0.179

0.875

GraphDTA

1D

GIN

0.139

0.891

WPGraphDTA

Word2vec

(A, A2, A3)

0.134

0.898

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BMC Medical Genomics

ISSN: 1755-8794

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