Table 3 Performance comparison with other models on Davis dataset
From: Drug-target binding affinity prediction based on power graph and word2vec
Model | Protein rep | Compound rep | MSE | CI |
|---|---|---|---|---|
KronRLS | Smith-Waterman | Pubchem-Sim | 0.379 | 0.871 |
SimBoost | Smith-Waterman | Pubchem-Sim | 0.282 | 0.872 |
DeepDTA | 1D | 1D | 0.261 | 0.878 |
WideDTA | 1D + PDM | 1D + LMCS | 0.262 | 0.886 |
GraphDTA | 1D | GIN | 0.229 | 0.893 |
WPGraphDTA | Word2vec | (A, A2, A3) | 0.226 | 0.895 |