Table 1 Gene-level quantification of CLN3 across nine ENCODE-defined organs, expressed as transcripts per million (TPMs)
From: CLN3 transcript complexity revealed by long-read RNA sequencing analysis
Organs | Number of Samples | Tissues | Min TPM | Median TPM | Max TPM | GTEx V8 median TPMs within specific tissues |
|---|---|---|---|---|---|---|
Blood | 16 | HL-60 | 21.20 | 63.10 | 136.10 | 19.07 |
Blood vessel | 6 | posterior vena cava, aorta, endothelial cell of umbilical vein | 11.44 | 17.56 | 41.87 | 11.52 – 13.36 |
Brain | 9 | middle frontal area 46 | 5.54 | 11.97 | 13.25 | 3.31—10.47 |
Connective tissue | 16 | IMR-90, osteocyte, WTC11, chondrocyte, mesenteric fat pad, HFFc6 | 8.61 | 18.07 | 62.77 | NA |
Embryo | 18 | H9, neural crest cell, endodermal cell, H1 | 12.93 | 21.09 | 46.38 | NA |
Endocrine gland | 9 | adrenal gland, type B pancreatic cell, right lobe of liver, progenitor cell of endocrine pancreas | 4.93 | 32.51 | 50.77 | 6.10 – 16.76 |
Heart | 17 | heart left ventricle, heart right ventricle, left cardiac atrium, right cardiac atrium, cardiac septum, Right ventricle myocardium inferior, left ventricle myocardium superior, left ventricle myocardium inferior, Right ventricle myocardium superior | 4.02 | 11.59 | 24.08 | 3.20 – 4.55 |
Lung | 6 | upper lobe of right lung, lower lobe of left lung, lower lobe of right lung, left lung | 23.25 | 40.25 | 107.08 | 22.18 |
Skin | 8 | WTC11, GM23338 | 4.79 | 15.50 | 27.08 | 16.61—17.85 |