Skip to main content

Table 3 MPRA-identified SNPs located in the enhancers in the TRAF1 and LNPEP/ERAP2 loci associated with gene expression levels of the candidate target genes in humans

From: A systematic strategy for identifying causal single nucleotide polymorphisms and their target genes on Juvenile arthritis risk haplotypes

Locus

Gene

SNP

P-value

P-value threshold

NES*

TRAF1

PHF19

rs10739578

0.00077

0.00021

0.065

  

rs2109896

0.084

0.00021

0.036

  

rs7859805

0.035

0.00021

0.044

  

rs10985080

0.000068

0.00021

0.078

LNPEP/ERAP2

ERAP2

rs1216565

2.4e-152

0.00020

0.87

 

LNPEP

rs1216565

0.0000064

0.00020

0.072

  1. NES = Normalized effect size
Back to article page

BMC Medical Genomics

ISSN: 1755-8794

Contact us