Table 2 SNPs screening positive in K562 stimulated by interferon gamma (n = 42)
SNP in H3K4me1 intronic region in PTPN22 (chr1:113,800,033–113,807,167) |
rs1217378 |
SNPs in H3K4me1 intronic region in IL6R/ATP8B2 (chr1:154,312,194 − 154,313,462) |
rs11581043 |
rs1194608 |
SNP in H3K4me1 intergenic region in IL6R/ATP8B2 (chr1:154,351,989 − 154,356,495) |
rs4845369 |
SNPs in H3K4me1 intronic region in IL10 (chr1:206,768,609 − 206,772,399) |
rs1518111 |
rs2945417 |
SNP within H3K4me1 intronic region in STAT4 (chr2:191,041,359 − 191,043,004) |
rs1996400 |
SNPs in H3K4me1 intergenic region in CCR2 (chr3:46,297,890 − 46,306,532) |
rs7374671 |
rs4683215 |
rs35053103 |
rs2888523 |
rs2888524 |
rs34997146 |
rs62242985 |
rs6441972 |
SNPs in H3K4me1 intronic region in TIMMDC1 (chr3:119,394,863 − 119,412,040) |
rs4687853 |
rs2177812 |
rs7610049 |
SNP in H3K4me1 intergenic region in LNPEP/ERAP2 (chr5:96,920,167 − 96,924,958) |
rs193994 |
rs1216565 |
SNP in H3K4me1 intronic region in LNPEP/ERAP2 (chr5:96,995,366 − 96,995,917) |
rs430827 |
SNPs in H3K4me1 intergenic region in IRF1 (chr5:132,490,541 − 132,492,289 |
rs41525648 |
rs2706385 |
rs2706386 |
SNPs in H3K4me1 intergenic region in TRAF1 (chr9:120,941,159 − 120,947,188) |
rs10818481 |
rs2900180 |
SNP in H3K4me1 intronic region in IL2RA (chr10:6,040,089 − 6,040,684) |
rs791592 |
SNPs in ATXN2 |
rs10849962 (Appears to be in the promoter; H3K27ac-marked region spans chr12:111,598,660 − 111,600,586) |
rs6416335 (Appears to be an exonic enhancer in BRAP (chr12:111,643,075–111,643,762) |
SNP in ZFP36L1 intronic region (chr14:68,794,471 − 68,796,262) |
rs3742887 |
SNPs in H3K4me1 intergenic region in ZFP36L1 (chr14:68,800,391 − 68,801,105) |
rs1595260 |
rs4899258 |
SNP in H3K4me1 intronic region in RMI2 (chr16:11,283,902 − 11,284,672) |
rs34764020 |
rs7205578 |
rs6498184 |
SNPs in H3K4me1 intergenic region in PTPN2 (chr18:12,775,801 − 12,776,691) |
rs4327116 |
rs2847279 |
rs9952753 |
SNP in H3K4me1 intronic region in PTPN2 (chr18:12,860,578 − 12,861,552) |
rs515151 |
SNPs in H3K4me1 intronic region in TYK2 / ICAM3 (chr19:10,333,403 − 10,334,831) |
rs2278442 |
rs2304240 |
SNP in H3K4me1 intronic region (chr19:10,347,076 − 10,348,009) |
rs510506 |