Fig. 3

Weighted gene co-expression network analysis for the clinical phenotypes and the DEGs. (A) Samples dendrogram and trait heatmap. (B) Clustering of module eigengenes and cluster dendrogram identified different modules (black, yellow, blue, turquoise, magenta, red, pink, brown, green, and gray). (C) Pearson correlation analysis between the gene module and 50 hallmarks of cancer and mRNAsi. The correlation coefficient and corresponding P value are annotated. (D) Scatter plot of module eigengenes in the pink module for mRNAsi. Abbreviations: DEG, differentially expressed genes; mRNAsi, mRNA expression-based stemness index.