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Table 2 Experimental results for each parameter set

From: Privacy-preserving approximate GWAS computation based on homomorphic encryption

Data

Params

Comp. time

Memory

F1 Score

 

Exp

iter

 

(GB)

TH: 10−2

TH: 10−5

TH: 10−12

iDash_Test

I

1

13 min*

9.3

0.960

0.969

0.243

 

I

2

27 min

16.7

0.985

0.985

0.955

 

I

4

32 min

16.7

1.000

0.999

0.997

 

II

4

52 min

22.0

1.000

0.999

0.998

iDash_Eval

I

4

38 min

19.4

0.998

0.995

0.992

 

II

 

62 min

25.4

0.998

0.996

0.994

  1. *: We used more streamlined parameter; logN=16,L=950,p=50,h=91
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BMC Medical Genomics

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